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Modeling Uncertain Data using Monads and an Application to the Sequence Alignment Problem

Modeling Uncertain Data using Monads and an Application to the Sequence Alignment Problem

Bioinformatics applies algorithms of text processing to the problem of DNA/protein sequencing to great success. But in many places one has to cope with uncertain…
Removing Dust using Sequence Alignment and Content Matching

Removing Dust using Sequence Alignment and Content Matching

1. International Research Journal of Engineering and Technology (IRJET) e-ISSN: 2395-0056 Volume: 04 Issue: 11 | Nov -2017 www.irjet.net p-ISSN: 2395-0072 © 2017, IRJET…
Multiple Sequence Alignment

Multiple Sequence Alignment

Multiple Sequence AlignmentMultiple Alignment- First pairAlign the two most closely-related sequences first.This alignment is then ‘fixed’ and will never change. If a…
Sequence Alignment

Sequence Alignment

Sequence Alignment. Outline. Global Alignment Scoring Matrices Local Alignment. From LCS to Alignment: Change up the Scoring. The Longest Common Subsequence (LCS)…
Multiple Sequence Alignment

Multiple Sequence Alignment

Multiple Sequence Alignment. Definition. Given N sequences x 1 , x 2 ,…, x N : Insert gaps (-) in each sequence x i , such that All sequences have the same…
Variants of HMM Sequence Alignment via HMM Lecture # 10

Variants of HMM Sequence Alignment via HMM Lecture # 10

Variants of HMMSequence Alignment via HMMLecture #10Background Readings: chapters 3.4, 3.5, 4, in the Durbin et al., 2001, Chapter 3.4 Setubal et al., 1997This class has…
Next Generation Sequence Alignment & Variant Discovery on the BRC-MH Linux Cluster

Next Generation Sequence Alignment & Variant Discovery on the BRC-MH Linux Cluster

Next Generation Sequence Alignment & Variant Discovery on the BRC-MH Linux Cluster. Steve Newhouse 28 Jan 2011. Overview. Practical guide to processing…
Expected accuracy sequence alignment

Expected accuracy sequence alignment

Expected accuracy sequence alignmentUsman RoshanOptimal pairwise alignmentSum of pairs (SP) optimization: find the alignment of two sequences that maximizes the…
Developing Pairwise Sequence Alignment Algorithms

Developing Pairwise Sequence Alignment Algorithms

Developing Pairwise Sequence Alignment Algorithms. Dr. Nancy Warter-Perez May 20, 2003. Outline. Group assignments for project Overview of global and local…
Lecture 1 Sequence Alignment

Lecture 1 Sequence Alignment

Lecture 1 Sequence Alignment. Sequence alignment: why?. Early in the days of protein and gene sequence analysis, it was discovered that the sequences from related…
A Sub-quadratic Sequence Alignment Algorithm for Unrestricted Scoring Matrics

A Sub-quadratic Sequence Alignment Algorithm for Unrestricted Scoring Matrics

A Sub-quadratic Sequence Alignment Algorithm for Unrestricted Scoring MatricsBy Cruchemor, Landau and Ziv-ukelsonAbstract We present an O(n²/log n) algorithm for…
Multiple Sequence Alignment

Multiple Sequence Alignment

Multiple Sequence Alignment. 暨南大學資訊工程學系 黃光璿 2004/05/31. What is a multiple alignment?. An alignment of ten I-set immunoglobin…
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