Standardized Workflows (I)

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Standardized Workflows (I). Carlos Oscar Sorzano Techn . Director I 2 PC Natl . Center Biotechnology (CSIC). What is a workflow ?. Input image. Workflow. Workflow. Output image. What is a workflow instance ?. Set Of Images.
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Standardized Workflows (I)Carlos Oscar SorzanoTechn. Director I2PCNatl. Center Biotechnology (CSIC)Whatis a workflow?Input imageWorkflowWorkflowOutput imageWhatis a workflowinstance?Set Of ImagesA workflowinstanceis a sequence of steps with some inputs and some outputs thatimplements a specificlogicaloperation.Commonlines in EMAN3D Reconstruction with referencevolume in XmippReconstructedvolumeWhatis a workflowinstance?LowpassfreqSet Of 2D ImagesTransitionbandwidthLowpassfilter in Xmipp with transition bandSet Of 2D ImagesFreq. SigmaSet Of 2D ImagesLowpassfilter in Xmipp with GaussianshapeSet Of 2D ImagesCan wegeneralize?Set Of 2D ImagesPreprocessing 2DSet Of 2D ImagesNormalizationWorkflowWorkflowinstanceCropping…A workflowisanabstraction of a set of workflowinstances(implementingthesamelogicalaction) coveringthecommon set of inputs and outputs.A wokflowontologyWe can define a workflowhierarchy.Whoneedsworkflows?
  • Individual packagesto define theirown “imageprocessing” workflow. Normally, thedefinition of theworkflowisimplicitor informalfrom a programmaticpoint of view.
  • Whoneedsworkflows?
  • Integrativeplatformstoconnectpiecesfromdifferentpackages. Normally, thedefinition of theworkflowisexplicit.
  • Integrativeplatforms are automatingwhatusershavebeenmanuallydoing for a long time.A wokflowontologyA wokflowontologyWhoneedsworkflows?What can be achieved?
  • ConsensuatedWorkflowOntology?
  • Interchangepoints (workflow I/O)?
  • WorkflowInterchangePointsInterchangePointsneedaninterchangestandardSpecificproposal in thediscussionAninterchangestandardneedsanautomaticcheck of complianceConclusions
  • ConsensuatedWorkflowOntology?
  • Interchangepoints (workflow I/O)?
  • Workflow+
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